Citizendia

For Renewed judgment as a matter of law (JMOL), see Renewed JMOL. Renewed judgment as a matter of law (JMOL is the partner of Judgment as a matter of law in American federal courts
Jmol
The Jmol logo.

Jmol is a Java molecular viewer for three-dimensional chemical structures.
Developed byJmol development team
Initial release ?
Stable release11.4.RC2  (January 27, 2008) [+/−]
Preview release11.5.3  (January 27, 2007) [+/−]
Written inJava
OSCross-platform
Available inCatalan, Czech, Dutch, English, Estonian, French, German, Portuguese, Spanish, Turkish
GenreMolecular modelling
LicenseLGPL
Websitewww.jmol.org and wiki.jmol.org

Jmol is a molecule viewer for use in chemistry and biochemistry. A software developer is a person or organization concerned with facets of the software development process wider than design and coding a somewhat broader scope of A software release is the distribution whether public or private of an initial or new and upgraded version of a Computer software product Events 98 - Trajan becomes Roman Emperor after the death of Nerva. 2008 ( MMVIII) is the current year in accordance with the Gregorian calendar, a Leap year that started on Tuesday of the Common A software release is the distribution whether public or private of an initial or new and upgraded version of a Computer software product Events 98 - Trajan becomes Roman Emperor after the death of Nerva. Year 2007 ( MMVII) was a Common year starting on Monday of the Gregorian calendar in the 21st century. A programming language is an Artificial language that can be used to write programs which control the behavior of a machine particularly a Computer. An operating system (commonly abbreviated OS and O/S) is the software component of a Computer system that is responsible for the management and coordination In computing cross-platform (also known as multi-platform) is a term used to refer to Computer software or computing methods and concepts that are implemented A language is a dynamic set of visual auditory or tactile Symbols of Communication and the elements used to manipulate them Catalan ˈkætəˌlæn ( català kətəˈla or) is a Romance language, the national and official language of Andorra, and a co-official Czech (ˈʧɛk čeština ˈʧɛʃcɪna in Czech is a West Slavic language with about 12 million native speakers it is the majority language in the Dutch ( is a West Germanic language spoken by around 24 million people 22 million of which are from the Netherlands, Belgium and Suriname English is a West Germanic language originating in England and is the First language for most people in the United Kingdom, the United States Estonian (; ˈeːsti ˈkeːl is the official language of Estonia, spoken by about 1 French ( français,) is a Romance language spoken around the world by 118 million people as a native language and by about 180 to 260 million people The German language (de ''Deutsch'') is a West Germanic language and one of the world's major languages. Portuguese ( or língua portuguesa) is a Romance language that originated in what is now Galicia (Spain and northern Portugal. Turkish ( tr Türkçe IPA) is a language spoken by over 63 million people worldwide making it the most commonly spoken of the Turkic languages. Computer software can be organized into categories based on common function type or field of use Molecular modelling is a collective term that refers to theoretical methods and computational techniques to model or mimic the behaviour of Molecules The techniques A software license (or software licence in commonwealth usage is a Legal instrument governing the usage or redistribution of copyright protected software The GNU Lesser General Public License (formerly the GNU Library General Public License) or LGPL is a Free software license published by the Free Software A website (alternatively web site or Web site, a back-construction from the Proper noun World Wide Web) is a collection of Web pages In Chemistry, a molecule is defined as a sufficiently stable electrically neutral group of at least two Atoms in a definite arrangement held together by Chemistry (from Egyptian kēme (chem meaning "earth") is the Science concerned with the composition structure and properties Biochemistry is the study of the chemical processes in living Organisms It deals with the Structure and function of cellular components such as It is free and open source. Open source is a development methodology which offers practical accessibility to a product's source (goods and knowledge It can be used as a teaching tool or in research. It is Java based and runs on Windows, Mac OS X, Linux and Unix systems. Microsoft Windows is a series of Software Operating systems and Graphical user interfaces produced by Microsoft. Mac OS X (mæk oʊ ɛs tɛn is a line of computer Operating systems developed marketed and sold by Apple Inc, the latest of which is pre-loaded on all currently Linux (commonly pronounced ˈlɪnəks Unix (officially trademarked as UNIX, sometimes also written as Unix with Small caps) is a computer There is a standalone application and a development tool kit that can be integrated into other Java applications. The most notable feature is an applet that can be integrated into web pages to display molecules in a variety of ways. For example, molecules can be displayed as "ball and stick" models, "space filling models", etc. Jmol supports a wide range of molecular file formats, including Protein Data Bank (pdb), Crystallographic Information File (cif), MDL Molfile (mol), and Chemical Markup Language (CML). This article discusses some common molecular file formats including usage and converting between them The Protein Data Bank (pdb file format is a textual file format describing the three dimensional structures of molecules held in the Protein Data Bank. Crystallographic Information File (CIF is a standard text file format for representing Crystallographic information promulgated by the International Union of Crystallography Chemical table files are files that contain information about chemicals CML ( C hemical M arkup L anguage is a new approach to managing Molecular information using tools such as XML and Java

The Jmol applet, among other capabilities, offers an alternative to the Chime plugin, which is no longer under active development. MDL Chime is a free Plugin used by Web browsers to display the three dimensional structures of Molecules. While Jmol has many features that are not available in Chime, it does not claim to reproduce all Chime functionality (most notably, Chime's Sculpt mode). Chime requires plug-in installation and Internet Explorer 6. Windows Internet Explorer (formerly Microsoft Internet Explorer abbreviated MSIE) commonly abbreviated to IE, is a series of graphical 0 or Mozilla Firefox 2 on Microsoft Windows, or OS 9/Netscape Communicator 4. Microsoft Windows is a series of Software Operating systems and Graphical user interfaces produced by Microsoft. Netscape Communicator is an Internet suite that was produced by Netscape Communications Corporation. 8 on the Macintosh. Macintosh, commonly nicknamed Mac is a Brand name which covers several lines of Personal computers designed developed and marketed by Apple Inc Jmol requires Java installation and operates on a wide variety of platforms. Jmol is fully functional in Mozilla Firefox on Microsoft Windows and Linux, and in Safari on Mac OS X. Microsoft Windows is a series of Software Operating systems and Graphical user interfaces produced by Microsoft. Linux (commonly pronounced ˈlɪnəks Safari is a Web browser developed by Apple Inc and included in Mac OS X. Mac OS X (mæk oʊ ɛs tɛn is a line of computer Operating systems developed marketed and sold by Apple Inc, the latest of which is pre-loaded on all currently

Version 11. 4 of Jmol was released in January 2008.

Contents


Screenshots

Crystal structure of an H/ACA box RNP from Pyrococcus furiosus

Highlighting two salt bridges in hemoglobin tetramer (hemo group as sticks at bottom-right).

A fragment of transcription factor TFIIIA forming three consecutive zinc finger motifs, bound to a stretch of DNA.

Eubacterial 70S Ribosome from Thermus thermophilus.

See also

External links

Notes


© 2009 citizendia.org; parts available under the terms of GNU Free Documentation License, from http://en.wikipedia.org
 Dapyx Software network: MP3 Explorer | Ebook Manager | Zenithic